last update : june 2012

Public data retrieved in march 2010



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AT1G25290 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT1G25290
Master Protein AT1G25290.1
Description (curated) rhomboid family protein
Calculated MW (PPDB) 38.22
Calculated PI (PPDB) 10.79
Length 343
Curated Annotation
Description (curated) rhomboid family protein /
Function (curated) chaperone and protease
Localization (SC) ENV
Localization (curated) Ch/E/IM
Localization (validated) No
Envelope spectral count 100.00
Stroma spectral count 0.00
Thylakoid spectral count 0.00
Total spectral count 4
References contains PFAM domain PF01694, Rhomboid family / This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan S-). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 . Members of this family are found in archaea, bacteria and eukaryotes. . Knopf, R.R., Adam, Z.Rhomboid proteases in plants - still in square one?. Physiologia Plantarum. 2012; 145 (1):41-51. pubmed:22007993. (AtRBL8, Review on rhomboid proteases)
Publication (PPDB)

Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
INSLIER 843.48138 0.26 49.1 1
VFMDSAPIPLLLR 1,486.82173 0.52 54 1
GGEEGSSNPETSKR 1,433.63820 0.10 70.2 2