last update : june 2012

Public data retrieved in march 2010



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AtCg00540 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AtCg00540
Master Protein AtCg00540
Description (curated) Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.
Calculated MW (PPDB) 35.35
Calculated PI (PPDB) 8.34
Length 320
Curated Annotation
Description (curated) PETA (CYF) cytochrome f apoprotein of the b6/f complex, chloroplast encoded precursor /
Function (curated) PS b6-F
Localization (SC) THY
Localization (curated) Ch/Th
Localization (validated) Yes
Envelope spectral count 11.50
Stroma spectral count 0.00
Thylakoid spectral count 88.50
Total spectral count 301
References cytochrome f (cleavable ss of 35 aa) / Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.
Publication (PPDB)

Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
EVIDIIPR 953.55455 0.39 54.6 45
GALNVGAVLILPEGFELAPPDRISPEMKEK 3,221.70047 0.51 110.1 4
GGYEITIVDASNGR 1,450.70515 0.36 67.8 4
ISPEMKEK 992.48482 0.10 46.2 19
QVLANGKK 856.51300 0.10 38.7 1
EKGGYEITIVDASNGR 1,707.84270 0.32 110 4
VQLSEMNF 966.44803 0.47 52.1 1
SNNTVYNATAGGIISK 1,608.81068 0.32 97.2 30
IGNLSFQNYRPNKK 1,677.89502 0.29 33.2 1
YPIYVGGNR 1,037.52937 0.28 40.1 5
NILVIGPVPGQK 1,233.74445 0.40 75.4 94
KGALNVGAVLILPEGFELAPPDR 2,375.32117 0.54 37.5 3
LDQPLTSNPNVGGFGQGDAEIVLQDPLR 2,949.48312 0.50 61.6 1
GALNVGAVLILPEGFELAPPDRISPEMKEK 3,205.70555 0.53 62 3
GGYEITIVDASNGREVIDIIPR 2,386.24915 0.50 62 1
IPYDMQLK 1,038.50557 0.29 30 1
GRGQIYPDGSK 1,176.58868 0.17 47.6 4
YSEITFPILAPDPATNKDVHFLK 2,615.36348 0.46 56.6 3
GALNVGAVLILPEGFELAPPDRISPEMKEK 3,189.71063 0.54 23.3 1
ISPEMKEK 976.48990 0.10 38 3
KNILVIGPVPGQK 1,361.83940 0.34 58.8 1
YSEITFPILAPDPATNK 1,875.96179 0.49 69.9 12
IVCANCHLANKPVDIEVPQTVLPDTVFEAVVK 3,556.77920 0.56 52.4 1
GALNVGAVLILPEGFELAPPDR 2,247.22621 0.59 85.6 12
VQLSEMNF 982.44295 0.37 55.9 4
GQIYPDGSK 963.46612 0.18 37.2 1
VQLSEMNF 998.43787 0.40 60.8 40
GLELLVSEGESIK 1,372.74489 0.45 98.7 24
QVLANGK 728.41804 0.11 35.3 2