last update : june 2012

Public data retrieved in march 2010



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AtCg00680 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AtCg00680
Master Protein AtCg00680
Description (curated) encodes for CP47, subunit of the photosystem II reaction center.
Calculated MW (PPDB) 56.03
Calculated PI (PPDB) 6.39
Length 508
Curated Annotation
Description (curated) PSBB (CP47) subunit of the photosystem II reaction center, chloroplast encoded /
Function (curated) PS PSII
Localization (SC) THY
Localization (curated) Ch/Th
Localization (validated) Yes
Envelope spectral count 1.51
Stroma spectral count 0.00
Thylakoid spectral count 98.49
Total spectral count 604
References encodes CP47, subunit of the photosystem II reaction center.
Publication (PPDB)

Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
MPTFFETFPVVLVDGDGIVR 2,254.13431 0.61 112.3 15
MPTFFETFPVVLVDGDGIVRADVPFRR 3,095.59015 0.59 49.2 2
AGSMDNGDGIAVGWLGHPVFR 2,171.02173 0.47 111.9 10
RAQLGEIFELDRATLK 1,859.02643 0.42 60.7 30
AQLGEIFELDRATLKSDGVFR 2,364.24367 0.49 57.3 2
QGMFVIPFMTR 1,341.65730 0.49 31.9 2
YQWDQGYFQQEIYR 1,922.85872 0.47 106.6 5
LAFYDYIGNNPAK 1,484.72992 0.44 96.2 47
RMPTFFETFPVVLVDGDGIVR 2,410.23541 0.57 101.7 10
VHTVVLNDPGR 1,205.65163 0.23 78.5 50
ADVPFRR 859.46640 0.21 26.5 2
RMPTFFETFPVVLVDGDGIVRADVPFR 3,095.59015 0.59 40 1
RMPTFFETFPVVLVDGDGIVR 2,394.24049 0.61 89.3 4
AQLGEIFELDR 1,289.66151 0.47 97.5 53
DVFAGIDPDLDAQVEFGAFQK 2,281.09020 0.58 130.9 19
LGDPTTKR 886.48721 0.13 63 38
AQLGEIFELDRATLK 1,702.92532 0.46 90.3 38
RMPTFFETFPVVLVDGDGIVR 2,426.23033 0.58 83.9 25
VSAGLAENQSLSEAWAKIPEKLAFYDYIGNNPAK 3,693.86774 0.55 24.8 1
AGSMDNGDGIAVGWLGHPVFR 2,155.02681 0.49 107.4 2
NKEGRELFVR 1,246.67815 0.22 39.6 2
MPTFFETFPVVLVDGDGIVR 2,238.13939 0.67 112.2 2
AGSMDNGDGIAVGWLGHPVFR 2,187.01665 0.45 109.7 3
RVSAGLAENQSLSEAWAKIPEK 2,383.24948 0.39 76.4 1
TGKPSLDLPK 1,054.60223 0.26 42.8 29
RAQLGEIFELDR 1,445.76262 0.41 84.5 59
MPTFFETFPVVLVDGDGIVRADVPFR 2,939.48904 0.63 70.8 1
MPTFFETFPVVLVDGDGIVR 2,270.12923 0.64 126 18
PSLDLPK 768.43814 0.29 51.4 5
QGMFVIPFMTR 1,357.65222 0.43 62 20
ATLKSDGVFR 1,092.59271 0.25 66.5 19
QGMFVIPFMTR 1,389.64206 0.48 71 65
QGMFVIPFMTR 1,373.64714 0.45 70.8 28
LGDPTTK 730.38611 0.13 54.3 19
VSAGLAENQSLSEAWAK 1,759.87401 0.38 82.9 13
VSAGLAENQSLSEAWAKIPEK 2,227.14838 0.43 43.3 2
QGMFVIPFMTR 1,325.66238 0.56 48.2 2
IPEKLAFYDYIGNNPAK 1,952.00429 0.43 103.6 4
YQWDQGYFQQEIYRR 2,078.95982 0.44 49.8 2