last update : june 2012

Public data retrieved in march 2010



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AT1G55480 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT1G55480
Master Protein AT1G55480.1
Description (curated) binding / protein binding
Calculated MW (PPDB) 37.41
Calculated PI (PPDB) 8.18
Length 335
Curated Annotation
Description (curated) TPR repeat containing protein, similarity to tyrosine phosphatase /
Function (curated) RNA Binding ?
Localization (SC) THY-ENV
Localization (curated) Ch
Localization (validated) Yes
Envelope spectral count 24.73
Stroma spectral count 3.87
Thylakoid spectral count 71.40
Total spectral count 61
References The tetratrico peptide repeat domain containing protein / similarity to putative tyrosine phosphatase / GB:AAF81798 GI:8926334 from [Oryza sativa];supported by full-length cDNA: Ceres:8301.
Publication (PPDB)

Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
IGPLLMQMEK 1,206.59880 0.31 38.5 1
SDPDLETLR 1,044.50874 0.30 31.1 2
IRSDPDLETLR 1,313.69391 0.28 51.7 5
DGGTYIDAILPGGSADK 1,648.79437 0.47 82.2 5
AEDTGELTEKEIIR 1,602.81003 0.30 99.7 8
NGKYEEALER 1,207.58325 0.22 36 1
SGYEDFKR 1,000.46136 0.21 26 1
LNQVQAGLSALEEALK 1,682.92023 0.57 102.5 6
QFDESFINESAINAIK 1,824.88933 0.47 92.3 6
SKDFDPLLK 1,061.57568 0.30 46.5 5
AEDTGELTEK 1,091.49822 0.18 58.2 7
IGPLLMQMEK 1,222.59372 0.32 56.7 12
NGKAEDTGELTEKEIIR 1,901.96936 0.27 39.4 1
DFDPLLK 846.44870 0.40 27.7 1
IRSDPDLETLRK 1,441.78886 0.23 37.7 4
SKDFDPLLKQFDESFINESAINAIK 2,868.45445 0.55 35.6 1