last update : june 2012

Public data retrieved in march 2010



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AT2G24020 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT2G24020
Master Protein AT2G24020.1
Description (curated) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30620.1); similar to unknown [Picea sitchensis] (GB:ABK26000.1); similar to Os02g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046090.1); contains InterPro domain Conserved hypo
Calculated MW (PPDB) 19.81
Calculated PI (PPDB) 9.13
Length 182
Curated Annotation
Description (curated) conserved plant and cyanobacterial protein (YbaB family), similarity with protein slr1847 [Synechocystis sp] /
Function (curated) unknown
Localization (SC) STR-ENV
Localization (curated) Ch/S & Ch/Th
Localization (validated) Yes
Envelope spectral count 21.65
Stroma spectral count 78.35
Thylakoid spectral count 0.00
Total spectral count 109
References Identities = 42/102 (41%), Positives = 61/102 (59%), similar to Valyl-tRNA synthetase Identities = 33/102 (32%), Positives = 55/102 (53%), contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718; supported by cDNA: gi_15081683_gb_AY048234.1 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30620.1); similar to Conserved hypothetical protein 103 [Medicago truncatula] (GB:ABE78786.1); similar to Os02g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046090.1)
Publication (PPDB)

Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
AQMVVQVEAVR 1,244.65465 0.28 72 8
AGIFGNMQNMYETVK 1,765.76506 0.37 89 6
MSDLAQSLGMPPGLSEGMK 2,027.88493 0.39 80.9 3
AGIFGNMQNMYETVK 1,701.78538 0.50 53 1
MSDLAQSLGMPPGLSEGMK 2,043.87985 0.40 146.4 16
SVVAMKER 950.48547 0.09 48.4 5
TDITEAAMELGSEK 1,525.68173 0.39 108.7 9
VTLSGNQQPIR 1,211.66220 0.24 96.3 30
TDITEAAMELGSEK 1,509.68681 0.38 69.8 3
TDITEAAMELGSEK 1,493.69190 0.43 68.9 1
AGIFGNMQNMYETVKK 1,893.86002 0.31 86 2
VTLSGNQQPIRTDITEAAMELGSEK 2,719.33337 0.44 88.2 2
AQMVVQVEAVR 1,260.64957 0.28 103.3 15
KAQMVVQVEAVR 1,388.74452 0.23 78.9 9